Excluding already mentioned ones:
1993 - Secret of Mana
1995 - Donkey Kong Country 2
1996 - Tomb Raider, Diablo? (Just because first game in a series is usually mentioned)
1998 - Final Fantasy Tactics, Xenogears, Baldur's Gate, Banjo-Kazooie
1999 - Silent Hill, System Shock 2, Sonic Adventure, Donkey Kong 64
2000 - Shenmue, Baldur's Gate II
2001 - Devil May Cry, Shenmue II, Golden Sun, ICO
2002 - Animal Crossing, Super Mario Sunshine
2003 - Fire Emblem, Aria of Sorrow
2004 - Paper Mario TTYD
2005 - Fire Emblem 9, Devil May Cry 3
2007 - Persona 3
2009 - Demon's Souls, The Sims 3
2010 - God of War III, Final Fantasy XIII
2011 - The Witcher 2
2012 - The Walking Dead, Civilization V
2014 - Bravely Default
2015 - Splatoon, Xenoblade Chronicles X, Life is Strange