Tag and Bink Were Here is really good if you like comedy. It's non-canon but it's a fun read.
http://starwars.wikia.com/wiki/Tag_and_Bink
Other than that there's a ton of stuff to choose from.
http://starwars.wikia.com/wiki/Dark_Horse_Comics
I liked the Rogue Squadron series the most out of what I've read. Vector was really good too. It takes place from the Old Republic era all the way up to Legacy. It's an interesting concept.
Legacy isn't actually that bad, I just have a dislike of it since the books pretty have to head in that direction now. The fact that the Sith are the villains yet again is somewhat annoying, especially after how good the NJO was without any Sith in sight. But Cade Skywalker is admittedly badass.
Invasion was good but I only read the first three or four issues. It ties into the NJO and the Yuuzhan Vong War so that's something you might want to look into.
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Gamertag-Murphiroth
Pokemon Black-1978-9490-1161